Installing fragmenter

Installing using conda

To install fragmenter with conda run the following

conda install -c omnia fragmenter

Installing from source

To install fragmenter from source, clone or download the GitHub repo. From inside the fragmenter directory, run the following:

python install

This command will not install dependencies. All dependencies are in the meta.yaml file


fragmenter is tested with python 3.6.

This toolkit uses OpenEye as a dependency so licenses for oechem, oequacpac and oeomega are required.


fragmenter is still pre-alpha. It is not fully tested and the API is still in flux.